FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036522 through 18771 annotations produced 1 hits

(CG7372):

Annotation Number : CG7372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036522
Gbrowse : chr3L:15613058-15617236 (+) // 100.0 //
Probeset : 1636156_at
Accessions : protein= NP_648789;, nucleotide= NM_140532;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0036522.
BDGP gene expression has embryonic in situ data for CG7372: 11 pix of staining in 12 body parts.
Homophila reports that CG7372 is a close match (4e-11) to human gene BCL11A;CTIP1;EVI9;HBFQTL5;KIAA1809 (NP_075044), a gene associated with Fetal hemoglobin quantitative trait locus 5, 142335 (3).
TRiP has 1 RNAi stocks for FBgn0036522 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036522 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 0	4 of 4	0.10	Down
Head	13 ± 0	4 of 4	0.10	Down
Eye	17 ± 2	4 of 4	0.18	Down
Thoracicoabdominal ganglion	12 ± 1	4 of 4	0.10	Down
Salivary gland	23 ± 6	3 of 4	0.25	Down
Crop	42 ± 2	4 of 4	0.40	Down
Midgut	18 ± 1	4 of 4	0.20	Down
Tubule	8 ± 2	1 of 4	0.10	Down
Hindgut	17 ± 1	4 of 4	0.20	Down
Heart	26 ± 1	4 of 4	0.27	Down
Fat body	26 ± 6	4 of 4	0.28	Down
Ovary	314 ± 9	4 of 4	3.30	Up
Testis	16 ± 0	4 of 4	0.20	Down
Male accessory glands	20 ± 1	4 of 4	0.20	Down
Virgin spermatheca	71 ± 5	4 of 4	0.75	Down
Mated spermatheca	60 ± 5	4 of 4	0.63	Down
Adult carcass	18 ± 1	2 of 4	0.20	Down
Larval CNS	592 ± 44	4 of 4	6.19	Up
Larval Salivary gland	56 ± 3	4 of 4	0.59	Down
Larval midgut	29 ± 4	4 of 4	0.31	Down
Larval tubule	19 ± 1	4 of 4	0.20	Down
Larval hindgut	26 ± 2	4 of 4	0.28	Down
Larval fat body	98 ± 11	4 of 4	1.00	None
Larval trachea	115 ± 6	4 of 4	1.21	None
Larval carcass	71 ± 5	4 of 4	0.74	Down
S2 cells (growing)	51 ± 1	4 of 4	0.53	Down
Whole fly	95 ± 7	4 of 4

Looking for FBgn0036522. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720