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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036529 through 18771 annotations produced 1 hits



polypeptide GalNAc transferase 8 (pgant8):

Annotation Number : CG7297
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036529
Gbrowse : chr3L:15676974-15679713 (+) // 100.0 //
Probeset : 1634828_at
Accessions : protein= NP_648800;, nucleotide= NM_140543;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004653 // polypept
FlyMine data for FBgn0036529.
Homophila reports that CG7297 is a close match (5e-66) to human gene GALNT3;HFTC;HHS (NP_004473), a gene associated with Hyperostosis-hyperphosphatemia syndrome, 610233 (3);Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3).
VDRC has 2 RNAi stocks for FBgn0036529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 20 of 4 0.50None
Head22 ± 24 of 4 1.70Up
Eye22 ± 04 of 4 1.77Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland19 ± 02 of 4 1.54Up
Crop102 ± 44 of 4 8.10Up
Midgut20 ± 14 of 4 1.60Up
Tubule25 ± 62 of 4 2.00None
Hindgut16 ± 13 of 4 1.30Up
Heart11 ± 24 of 4 0.92None
Fat body23 ± 44 of 4 1.88Up
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.30Down
Male accessory glands567 ± 74 of 444.90Up
Virgin spermatheca33 ± 14 of 4 2.61Up
Mated spermatheca28 ± 64 of 4 2.23None
Adult carcass14 ± 32 of 4 1.10None
Larval CNS7 ± 23 of 4 0.61Down
Larval Salivary gland48 ± 34 of 4 3.87Up
Larval midgut16 ± 14 of 4 1.30None
Larval tubule66 ± 24 of 4 5.30Up
Larval hindgut130 ± 44 of 410.34Up
Larval fat body233 ± 194 of 418.50Up
Larval trachea56 ± 84 of 4 4.50Up
Larval carcass39 ± 24 of 4 3.12Up
S2 cells (growing)1 ± 00 of 4 0.11Down
Whole fly12 ± 04 of 4

Looking for FBgn0036529. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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