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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036532 through 18771 annotations produced 1 hits



(CG13445):

Annotation Number : CG13445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036532
Gbrowse : chr3L:15802597-15802983 (+) // 100.0 //
Probeset : 1630352_at
Accessions : protein= NP_648803;, nucleotide= NM_140546;
FlyMine data for FBgn0036532.
VDRC has 2 RNAi stocks for FBgn0036532 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.00None
Head2 ± 10 of 4 3.30None
Eye0 ± 00 of 4 0.65None
Thoracicoabdominal ganglion0 ± 00 of 4 0.70None
Salivary gland5 ± 20 of 4 8.00None
Crop1 ± 00 of 4 2.50None
Midgut1 ± 00 of 4 2.60Up
Tubule0 ± 00 of 4 1.40None
Hindgut0 ± 00 of 4 1.30None
Heart0 ± 00 of 4 1.15None
Fat body1 ± 00 of 4 1.88None
Ovary0 ± 00 of 4 0.70None
Testis1 ± 00 of 4 2.30None
Male accessory glands1 ± 00 of 4 2.20Up
Virgin spermatheca1 ± 00 of 4 2.00None
Mated spermatheca1 ± 00 of 4 2.27None
Adult carcass1 ± 00 of 4 1.90None
Larval CNS0 ± 00 of 4 0.85None
Larval Salivary gland184 ± 553 of 4284.42Up
Larval midgut1 ± 00 of 4 2.73None
Larval tubule0 ± 00 of 4 1.30None
Larval hindgut2 ± 00 of 4 3.12Up
Larval fat body2 ± 00 of 4 4.50Up
Larval trachea3 ± 30 of 4 5.12None
Larval carcass0 ± 00 of 4 1.31None
S2 cells (growing)0 ± 00 of 4 1.35None
Whole fly0 ± 00 of 4

Looking for FBgn0036532. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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