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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036534 through 18771 annotations produced 1 hits



CG6169 (Dcp2):

Annotation Number : CG6169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036534
Gbrowse : chr3L:15813495-15819519 (-) // 100.0 //
Probeset : 1632415_s_at
Accessions : protein= NP_001014585; /// NP_648805; /// NP_730074; /// NP_996100;, nucleotide= NM_001014585; /// NM_140548; /// NM_168634; /// NM_206378;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0000956 // nuclear-transcribed mRNA catabolic process //
Interpro : 0000932 // cytoplasmic mRNA processing body // inferred from direct assay
FlyMine data for FBgn0036534.
BDGP gene expression has embryonic in situ data for CG6169: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0036534 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036534 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 14 of 4 1.00None
Head78 ± 94 of 4 1.00None
Eye47 ± 64 of 4 0.59Down
Thoracicoabdominal ganglion57 ± 74 of 4 0.70Down
Salivary gland108 ± 54 of 4 1.33Up
Crop169 ± 114 of 4 2.10Up
Midgut87 ± 34 of 4 1.10None
Tubule14 ± 13 of 4 0.20Down
Hindgut73 ± 34 of 4 0.90None
Heart64 ± 24 of 4 0.80None
Fat body72 ± 74 of 4 0.89None
Ovary163 ± 74 of 4 2.00Up
Testis59 ± 74 of 4 0.70None
Male accessory glands92 ± 44 of 4 1.10None
Virgin spermatheca34 ± 34 of 4 0.42Down
Mated spermatheca37 ± 24 of 4 0.46Down
Adult carcass78 ± 124 of 4 1.00None
Larval CNS123 ± 164 of 4 1.52Up
Larval Salivary gland38 ± 24 of 4 0.48Down
Larval midgut64 ± 54 of 4 0.79None
Larval tubule80 ± 24 of 4 1.00None
Larval hindgut52 ± 14 of 4 0.64Down
Larval fat body73 ± 54 of 4 0.90None
Larval trachea59 ± 94 of 4 0.74Down
Larval carcass55 ± 64 of 4 0.68Down
S2 cells (growing)211 ± 34 of 4 2.61Up
Whole fly81 ± 54 of 4

Looking for FBgn0036534. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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