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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036536 through 18771 annotations produced 1 hits



(CG12713):

Annotation Number : CG12713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036536
Gbrowse : chr3L:15825559-15827043 (+) // 100.0 //
Probeset : 1631249_at
Accessions : protein= NP_648806;, nucleotide= NM_140549;
FlyMine data for FBgn0036536.
BDGP gene expression has embryonic in situ data for CG12713: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036536 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.20Down
Head12 ± 13 of 4 0.20Down
Eye13 ± 14 of 4 0.17Down
Thoracicoabdominal ganglion14 ± 14 of 4 0.20Down
Salivary gland15 ± 31 of 4 0.20Down
Crop14 ± 23 of 4 0.20Down
Midgut15 ± 14 of 4 0.20Down
Tubule20 ± 23 of 4 0.30Down
Hindgut13 ± 24 of 4 0.20Down
Heart16 ± 13 of 4 0.21Down
Fat body20 ± 14 of 4 0.27Down
Ovary234 ± 124 of 4 3.00Up
Testis122 ± 44 of 4 1.60Up
Male accessory glands18 ± 14 of 4 0.20Down
Virgin spermatheca18 ± 03 of 4 0.23Down
Mated spermatheca19 ± 23 of 4 0.25Down
Adult carcass16 ± 12 of 4 0.20Down
Larval CNS36 ± 24 of 4 0.47Down
Larval Salivary gland44 ± 34 of 4 0.58Down
Larval midgut14 ± 04 of 4 0.19Down
Larval tubule22 ± 04 of 4 0.30Down
Larval hindgut15 ± 14 of 4 0.20Down
Larval fat body44 ± 94 of 4 0.60Down
Larval trachea35 ± 74 of 4 0.46Down
Larval carcass22 ± 24 of 4 0.30Down
S2 cells (growing)51 ± 14 of 4 0.67Down
Whole fly77 ± 54 of 4

Looking for FBgn0036536. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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