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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036537 through 18771 annotations produced 1 hits



(CG18081):

Annotation Number : CG18081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036537
Gbrowse : chr3L:15826894-15828486 (-) // 100.0 //
Probeset : 1623551_at
Accessions : protein= NP_648807;, nucleotide= NM_140550;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0036537.
BioGrid reports that CG18081 interacts with CG1814 CG9025 .
VDRC has 1 RNAi stocks for FBgn0036537 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain296 ± 134 of 4 0.70Down
Head514 ± 324 of 4 1.20None
Eye1024 ± 464 of 4 2.32Up
Thoracicoabdominal ganglion345 ± 164 of 4 0.80Down
Salivary gland589 ± 254 of 4 1.33Up
Crop607 ± 224 of 4 1.40Up
Midgut258 ± 84 of 4 0.60Down
Tubule279 ± 124 of 4 0.60Down
Hindgut249 ± 94 of 4 0.60Down
Heart563 ± 94 of 4 1.27Up
Fat body465 ± 654 of 4 1.05None
Ovary678 ± 154 of 4 1.50Up
Testis314 ± 34 of 4 0.70Down
Male accessory glands817 ± 414 of 4 1.80Up
Virgin spermatheca823 ± 324 of 4 1.86Up
Mated spermatheca930 ± 404 of 4 2.10Up
Adult carcass283 ± 254 of 4 0.60Down
Larval CNS892 ± 244 of 4 2.02Up
Larval Salivary gland939 ± 234 of 4 2.12Up
Larval midgut361 ± 74 of 4 0.82None
Larval tubule425 ± 144 of 4 1.00None
Larval hindgut449 ± 84 of 4 1.02None
Larval fat body588 ± 514 of 4 1.30None
Larval trachea550 ± 334 of 4 1.24Up
Larval carcass729 ± 694 of 4 1.65Up
S2 cells (growing)468 ± 114 of 4 1.06None
Whole fly442 ± 324 of 4

Looking for FBgn0036537. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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