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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036538 through 18771 annotations produced 1 hits



(CG15715):

Annotation Number : CG15715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036538
Gbrowse : chr3L:15828977-15830580 (-) // 100.0 //
Probeset : 1637598_at
Accessions : protein= NP_648808;, nucleotide= NM_140551;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0036538.
BDGP gene expression has embryonic in situ data for CG15715: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain435 74 of 4 0.70Down
Head484 184 of 4 0.80Down
Eye583 174 of 4 0.95None
Thoracicoabdominal ganglion391 84 of 4 0.60Down
Salivary gland261 124 of 4 0.42Down
Crop613 74 of 4 1.00None
Midgut574 184 of 4 0.90None
Tubule167 64 of 4 0.30Down
Hindgut325 124 of 4 0.50Down
Heart389 204 of 4 0.63Down
Fat body350 214 of 4 0.57Down
Ovary1081 244 of 4 1.80Up
Testis908 364 of 4 1.50Up
Male accessory glands545 194 of 4 0.90Down
Virgin spermatheca209 294 of 4 0.34Down
Mated spermatheca252 374 of 4 0.41Down
Adult carcass308 44 of 4 0.50Down
Larval CNS864 684 of 4 1.40Up
Larval Salivary gland209 154 of 4 0.34Down
Larval midgut590 364 of 4 0.96None
Larval tubule249 64 of 4 0.40Down
Larval hindgut305 144 of 4 0.50Down
Larval fat body244 484 of 4 0.40Down
Larval trachea615 374 of 4 1.00None
Larval carcass413 534 of 4 0.67Down
S2 cells (growing)1002 124 of 4 1.63Up
Whole fly615 94 of 4

Looking for FBgn0036538. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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