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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036544 through 18771 annotations produced 2 hits



SNF1-related (CG6114):

Annotation Number : CG6114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036544
Gbrowse : chr3L:15893249-15902230 (-) // 100.0 //
Probeset : 1634134_at
Accessions : protein= NP_648814;, nucleotide= NM_140557;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0036544.
Homophila reports that CG6114 is a close match (9e-11) to human gene AUTS9;MET (NP_000236), a gene associated with Hepatocellular carcinoma, childhood type, 114550 (3);Renal cell carcinoma, papillary, familial and sporadic, 605074 (3);{Autism, suseptibility to, 9}, 611015 (3).
TRiP has 1 RNAi stocks for FBgn0036544 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain356 94 of 437.00Up
Head69 34 of 4 7.20Up
Eye186 124 of 419.39Up
Thoracicoabdominal ganglion384 184 of 440.00Up
Salivary gland11 30 of 4 1.19None
Crop6 10 of 4 0.60None
Midgut0 00 of 4 0.10Down
Tubule6 00 of 4 0.70Down
Hindgut3 10 of 4 0.40Down
Heart3 00 of 4 0.34Down
Fat body19 84 of 4 2.02None
Ovary3 00 of 4 0.30Down
Testis1 00 of 4 0.10Down
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca25 24 of 4 2.68Up
Mated spermatheca39 114 of 4 4.05None
Adult carcass5 10 of 4 0.60None
Larval CNS289 224 of 430.06Up
Larval Salivary gland4 10 of 4 0.46Down
Larval midgut1 00 of 4 0.10Down
Larval tubule5 21 of 4 0.60None
Larval hindgut2 10 of 4 0.30Down
Larval fat body3 20 of 4 0.40None
Larval trachea5 71 of 4 0.57None
Larval carcass2 10 of 4 0.28Down
S2 cells (growing)2 00 of 4 0.23Down
Whole fly9 13 of 4



SNF1-related (CG6114):

Annotation Number : S.C3L001985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036544
Gbrowse : chr3L:15903600-15904341 (-) // 89.71 //
Probeset : 1623313_at
Accessions : protein= NP_648814;, nucleotide= NM_140557;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0036544.
TRiP has 1 RNAi stocks for FBgn0036544 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 23 of 4 4.00Up
Head5 21 of 4 2.50None
Eye6 10 of 4 2.83Up
Thoracicoabdominal ganglion4 10 of 4 1.80None
Salivary gland6 30 of 4 2.71None
Crop4 20 of 4 1.70None
Midgut4 10 of 4 1.90None
Tubule3 00 of 4 1.40Up
Hindgut3 10 of 4 1.30None
Heart3 00 of 4 1.43None
Fat body9 42 of 4 4.02None
Ovary0 00 of 4 0.40None
Testis1 10 of 4 0.80None
Male accessory glands8 00 of 4 3.80Up
Virgin spermatheca2 10 of 4 1.01None
Mated spermatheca1 00 of 4 0.54None
Adult carcass6 20 of 4 2.70None
Larval CNS2 10 of 4 0.86None
Larval Salivary gland2 10 of 4 1.17None
Larval midgut0 00 of 4 0.32None
Larval tubule0 00 of 4 0.30None
Larval hindgut3 10 of 4 1.44None
Larval fat body1 00 of 4 0.50None
Larval trachea1 10 of 4 0.61None
Larval carcass0 00 of 4 0.28None
S2 cells (growing)0 00 of 4 0.28None
Whole fly2 00 of 4

Looking for FBgn0036544. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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