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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036546 through 18771 annotations produced 1 hits



early girl (elgi):

Annotation Number : CG17033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036546
Gbrowse : chr3L:15949649-15951533 (+) // 100.0 //
Probeset : 1636108_at
Accessions : protein= NP_648816;, nucleotide= NM_140559;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0036546.
BDGP gene expression has embryonic in situ data for CG17033: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036546 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 ± 64 of 4 0.90None
Head163 ± 164 of 4 0.60Down
Eye179 ± 44 of 4 0.62Down
Thoracicoabdominal ganglion296 ± 164 of 4 1.00None
Salivary gland96 ± 74 of 4 0.34Down
Crop316 ± 114 of 4 1.10None
Midgut115 ± 34 of 4 0.40Down
Tubule95 ± 24 of 4 0.30Down
Hindgut138 ± 24 of 4 0.50Down
Heart202 ± 74 of 4 0.70None
Fat body165 ± 74 of 4 0.57Down
Ovary587 ± 254 of 4 2.00Up
Testis279 ± 64 of 4 1.00None
Male accessory glands204 ± 134 of 4 0.70None
Virgin spermatheca108 ± 34 of 4 0.38Down
Mated spermatheca146 ± 124 of 4 0.51Down
Adult carcass119 ± 54 of 4 0.40Down
Larval CNS324 ± 144 of 4 1.12None
Larval Salivary gland187 ± 54 of 4 0.65None
Larval midgut137 ± 44 of 4 0.48Down
Larval tubule125 ± 54 of 4 0.40Down
Larval hindgut118 ± 24 of 4 0.41Down
Larval fat body227 ± 74 of 4 0.80None
Larval trachea262 ± 114 of 4 0.91None
Larval carcass135 ± 94 of 4 0.47Down
S2 cells (growing)98 ± 64 of 4 0.34Down
Whole fly288 ± 334 of 4

Looking for FBgn0036546. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime