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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036549 through 18771 annotations produced 1 hits



(CG10516):

Annotation Number : CG10516
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036549
Gbrowse : chr3L:15961262-15962910 (+) // 100.0 //
Probeset : 1623666_at
Accessions : protein= NP_648819;, nucleotide= NM_140562;
FlyMine data for FBgn0036549.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 14 of 4 0.60Down
Head116 ± 64 of 4 1.30Up
Eye74 ± 54 of 4 0.83None
Thoracicoabdominal ganglion39 ± 34 of 4 0.40Down
Salivary gland56 ± 64 of 4 0.63Down
Crop48 ± 24 of 4 0.50Down
Midgut41 ± 34 of 4 0.50Down
Tubule2069 ± 3934 of 423.10Up
Hindgut56 ± 34 of 4 0.60Down
Heart271 ± 554 of 4 3.02Up
Fat body508 ± 2104 of 4 5.67Up
Ovary57 ± 34 of 4 0.60Down
Testis83 ± 34 of 4 0.90None
Male accessory glands55 ± 64 of 4 0.60Down
Virgin spermatheca670 ± 944 of 4 7.47Up
Mated spermatheca475 ± 1304 of 4 5.30None
Adult carcass267 ± 254 of 4 3.00Up
Larval CNS65 ± 54 of 4 0.73Down
Larval Salivary gland57 ± 64 of 4 0.64Down
Larval midgut34 ± 24 of 4 0.39Down
Larval tubule321 ± 284 of 4 3.60Up
Larval hindgut34 ± 24 of 4 0.38Down
Larval fat body56 ± 24 of 4 0.60Down
Larval trachea63 ± 114 of 4 0.71Down
Larval carcass179 ± 674 of 4 2.01None
S2 cells (growing)61 ± 24 of 4 0.69Down
Whole fly89 ± 34 of 4

Looking for FBgn0036549. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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