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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036550 through 18771 annotations produced 1 hits



(CG17026):

Annotation Number : CG17026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036550
Gbrowse : chr3L:15968557-15969469 (+) // 100.0 //
Probeset : 1633637_at
Accessions : protein= NP_648820;, nucleotide= NM_140563;
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008934 // i
FlyMine data for FBgn0036550.
VDRC has 4 RNAi stocks for FBgn0036550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 ± 34 of 4 2.70Up
Head118 ± 34 of 4 2.60Up
Eye68 ± 34 of 4 1.51Up
Thoracicoabdominal ganglion173 ± 84 of 4 3.80Up
Salivary gland53 ± 34 of 4 1.17None
Crop118 ± 74 of 4 2.60Up
Midgut28 ± 14 of 4 0.60Down
Tubule1342 ± 524 of 429.50Up
Hindgut201 ± 44 of 4 4.40Up
Heart6 ± 11 of 4 0.14Down
Fat body15 ± 30 of 4 0.35Down
Ovary5 ± 12 of 4 0.10Down
Testis11 ± 04 of 4 0.20Down
Male accessory glands135 ± 114 of 4 3.00Up
Virgin spermatheca19 ± 22 of 4 0.42Down
Mated spermatheca17 ± 24 of 4 0.39Down
Adult carcass66 ± 24 of 4 1.50Up
Larval CNS61 ± 154 of 4 1.34None
Larval Salivary gland10 ± 01 of 4 0.23Down
Larval midgut16 ± 04 of 4 0.35Down
Larval tubule2478 ± 684 of 454.40Up
Larval hindgut57 ± 44 of 4 1.27Up
Larval fat body6 ± 20 of 4 0.10Down
Larval trachea235 ± 204 of 4 5.18Up
Larval carcass452 ± 494 of 4 9.94Up
S2 cells (growing)6 ± 02 of 4 0.15Down
Whole fly45 ± 24 of 4

Looking for FBgn0036550. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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