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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036556 through 18771 annotations produced 1 hits



(CG5830):

Annotation Number : CG5830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036556
Gbrowse : chr3L:15985759-15997835 (-) // 99.8 //
Probeset : 1625794_at
Accessions : protein= NP_648825;, nucleotide= NM_140568;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred fro
FlyMine data for FBgn0036556.
TRiP has 2 RNAi stocks for FBgn0036556 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036556 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain410 144 of 4 3.30Up
Head249 124 of 4 2.00Up
Eye222 184 of 4 1.78Up
Thoracicoabdominal ganglion382 114 of 4 3.10Up
Salivary gland424 174 of 4 3.40Up
Crop498 124 of 4 4.00Up
Midgut264 104 of 4 2.10Up
Tubule340 354 of 4 2.70Up
Hindgut347 104 of 4 2.80Up
Heart157 84 of 4 1.26Up
Fat body393 224 of 4 3.15Up
Ovary54 34 of 4 0.40Down
Testis39 64 of 4 0.30Down
Male accessory glands370 224 of 4 3.00Up
Virgin spermatheca193 114 of 4 1.55Up
Mated spermatheca224 174 of 4 1.80Up
Adult carcass349 414 of 4 2.80Up
Larval CNS474 244 of 4 3.80Up
Larval Salivary gland224 214 of 4 1.80Up
Larval midgut337 144 of 4 2.70Up
Larval tubule312 124 of 4 2.50Up
Larval hindgut460 154 of 4 3.69Up
Larval fat body101 54 of 4 0.80None
Larval trachea238 234 of 4 1.91Up
Larval carcass393 124 of 4 3.15Up
S2 cells (growing)298 94 of 4 2.39Up
Whole fly124 94 of 4

Looking for FBgn0036556. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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