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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036557 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S31 (mRpS31):

Annotation Number : CG5904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036557
Gbrowse : chr3L:15998296-15999701 (+) // 100.0 //
Probeset : 1639057_at
Accessions : protein= NP_524100;, nucleotide= NM_079376;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from direct assay /// 0000781 // chromosome
FlyMine data for FBgn0036557.
BDGP gene expression has embryonic in situ data for mRpS31: 14 pix of staining in 13 body parts.
VDRC has 2 RNAi stocks for FBgn0036557 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 ± 24 of 4 1.20Up
Head194 ± 44 of 4 1.00None
Eye158 ± 54 of 4 0.83Down
Thoracicoabdominal ganglion239 ± 44 of 4 1.30Up
Salivary gland175 ± 174 of 4 0.92None
Crop203 ± 44 of 4 1.10None
Midgut150 ± 84 of 4 0.80Down
Tubule219 ± 104 of 4 1.20Up
Hindgut229 ± 24 of 4 1.20Up
Heart141 ± 74 of 4 0.75Down
Fat body164 ± 174 of 4 0.87None
Ovary287 ± 74 of 4 1.50Up
Testis100 ± 34 of 4 0.50Down
Male accessory glands239 ± 74 of 4 1.30Up
Virgin spermatheca202 ± 74 of 4 1.06None
Mated spermatheca233 ± 124 of 4 1.23Up
Adult carcass173 ± 84 of 4 0.90None
Larval CNS252 ± 84 of 4 1.33Up
Larval Salivary gland183 ± 64 of 4 0.97None
Larval midgut109 ± 114 of 4 0.58Down
Larval tubule120 ± 14 of 4 0.60Down
Larval hindgut217 ± 124 of 4 1.15None
Larval fat body86 ± 54 of 4 0.50Down
Larval trachea188 ± 144 of 4 0.99None
Larval carcass197 ± 234 of 4 1.04None
S2 cells (growing)216 ± 54 of 4 1.14Up
Whole fly189 ± 44 of 4

Looking for FBgn0036557. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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