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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036563 through 18771 annotations produced 1 hits



(CG13075):

Annotation Number : CG13075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036563
Gbrowse : chr3L:16077135-16078278 (+) // 100.0 //
Probeset : 1627771_at
Accessions : protein= NP_648831;, nucleotide= NM_140574;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0036563.
BioGrid reports that CG13075 interacts with CG13482 CG15781 .
VDRC has 2 RNAi stocks for FBgn0036563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.30None
Head0 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.24Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.20Down
Salivary gland4 ± 20 of 4 0.43None
Crop12 ± 30 of 4 1.20None
Midgut1 ± 00 of 4 0.20Down
Tubule202 ± 434 of 418.90Up
Hindgut273 ± 374 of 425.50Up
Heart0 ± 00 of 4 0.07Down
Fat body43 ± 811 of 4 4.08None
Ovary1 ± 00 of 4 0.10Down
Testis15 ± 13 of 4 1.40None
Male accessory glands2 ± 10 of 4 0.30Down
Virgin spermatheca2 ± 00 of 4 0.25Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS1 ± 00 of 4 0.10Down
Larval Salivary gland1 ± 00 of 4 0.14Down
Larval midgut1 ± 00 of 4 0.11Down
Larval tubule4116 ± 1564 of 4384.70Up
Larval hindgut1425 ± 944 of 4133.25Up
Larval fat body5 ± 20 of 4 0.50None
Larval trachea1 ± 00 of 4 0.12Down
Larval carcass1 ± 00 of 4 0.18Down
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly10 ± 21 of 4

Looking for FBgn0036563. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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