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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036566 through 18771 annotations produced 1 hits



Chloride channel-c (ClC-c):

Annotation Number : CG5284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036566
Gbrowse : chr3L:16083555-16089031 (+) // 100.0 //
Probeset : 1641321_a_at
Accessions : protein= NP_648834; /// NP_730105;, nucleotide= NM_140577; /// NM_168650;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel act
FlyMine data for FBgn0036566.
Homophila reports that CG5284 is a close match (1e-29) to human gene CLCNKA (NP_004061), a gene associated with Bartter syndrome, type 4, digenic, 602522 (3).
BioGrid reports that CG5284 interacts with CG5325 .
TRiP has 1 RNAi stocks for FBgn0036566 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain568 114 of 4 1.80Up
Head451 274 of 4 1.40Up
Eye543 254 of 4 1.71Up
Thoracicoabdominal ganglion503 204 of 4 1.60Up
Salivary gland568 254 of 4 1.79Up
Crop545 184 of 4 1.70Up
Midgut292 54 of 4 0.90None
Tubule1335 274 of 4 4.20Up
Hindgut361 94 of 4 1.10None
Heart678 244 of 4 2.13Up
Fat body436 474 of 4 1.37Up
Ovary540 44 of 4 1.70Up
Testis75 44 of 4 0.20Down
Male accessory glands357 84 of 4 1.10None
Virgin spermatheca648 384 of 4 2.04Up
Mated spermatheca668 64 of 4 2.10Up
Adult carcass268 84 of 4 0.80None
Larval CNS546 564 of 4 1.72Up
Larval Salivary gland1056 754 of 4 3.32Up
Larval midgut703 94 of 4 2.21Up
Larval tubule875 84 of 4 2.80Up
Larval hindgut600 204 of 4 1.89Up
Larval fat body418 264 of 4 1.30Up
Larval trachea367 334 of 4 1.16None
Larval carcass433 64 of 4 1.36Up
S2 cells (growing)344 114 of 4 1.08None
Whole fly317 174 of 4

Looking for FBgn0036566. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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