Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036569 through 18771 annotations produced 1 hits



(CG5414):

Annotation Number : CG5414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036569
Gbrowse : chr3L:16093449-16096533 (+) // 100.0 //
Probeset : 1633557_at
Accessions : protein= NP_648837;, nucleotide= NM_140580;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0036569.
VDRC has 3 RNAi stocks for FBgn0036569 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 14 of 4 1.20Up
Head24 ± 04 of 4 0.70Down
Eye23 ± 04 of 4 0.66Down
Thoracicoabdominal ganglion68 ± 34 of 4 1.90Up
Salivary gland14 ± 40 of 4 0.40Down
Crop41 ± 14 of 4 1.10None
Midgut44 ± 24 of 4 1.20None
Tubule34 ± 14 of 4 1.00None
Hindgut25 ± 24 of 4 0.70Down
Heart21 ± 23 of 4 0.60Down
Fat body31 ± 21 of 4 0.87None
Ovary94 ± 24 of 4 2.60Up
Testis6 ± 10 of 4 0.20Down
Male accessory glands27 ± 22 of 4 0.80Down
Virgin spermatheca29 ± 32 of 4 0.83None
Mated spermatheca24 ± 31 of 4 0.68Down
Adult carcass24 ± 11 of 4 0.70Down
Larval CNS61 ± 94 of 4 1.71Up
Larval Salivary gland31 ± 34 of 4 0.87None
Larval midgut19 ± 04 of 4 0.53Down
Larval tubule25 ± 14 of 4 0.70Down
Larval hindgut33 ± 24 of 4 0.93None
Larval fat body20 ± 22 of 4 0.60Down
Larval trachea36 ± 64 of 4 1.02None
Larval carcass32 ± 23 of 4 0.90None
S2 cells (growing)58 ± 34 of 4 1.62Up
Whole fly36 ± 14 of 4

Looking for FBgn0036569. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime