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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036576 through 18771 annotations produced 2 hits



(CG5151):

Annotation Number : CG5151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036576
Gbrowse : chr3L:16132588-16141834 (-) // 99.78 //
Probeset : 1639803_at
Accessions : protein= NP_648844; /// NP_996104;, nucleotide= NM_140587; /// NM_206382;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036576.
BDGP gene expression has embryonic in situ data for CG5151: 8 pix of staining in 1 body parts.
BioGrid reports that CG5151 interacts with CG5303 CG8191 .
VDRC has 4 RNAi stocks for FBgn0036576 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 ± 54 of 4 1.90Up
Head102 ± 54 of 4 1.20None
Eye50 ± 24 of 4 0.58Down
Thoracicoabdominal ganglion146 ± 44 of 4 1.70Up
Salivary gland91 ± 144 of 4 1.06None
Crop155 ± 134 of 4 1.80Up
Midgut108 ± 74 of 4 1.30None
Tubule120 ± 134 of 4 1.40Up
Hindgut155 ± 84 of 4 1.80Up
Heart120 ± 44 of 4 1.39Up
Fat body318 ± 694 of 4 3.68Up
Ovary141 ± 64 of 4 1.60Up
Testis43 ± 34 of 4 0.50Down
Male accessory glands60 ± 54 of 4 0.70Down
Virgin spermatheca49 ± 44 of 4 0.57Down
Mated spermatheca93 ± 44 of 4 1.08None
Adult carcass159 ± 104 of 4 1.80Up
Larval CNS302 ± 664 of 4 3.50Up
Larval Salivary gland479 ± 624 of 4 5.53Up
Larval midgut335 ± 214 of 4 3.87Up
Larval tubule453 ± 314 of 4 5.20Up
Larval hindgut518 ± 234 of 4 5.98Up
Larval fat body455 ± 274 of 4 5.30Up
Larval trachea187 ± 264 of 4 2.17Up
Larval carcass275 ± 614 of 4 3.18None
S2 cells (growing)414 ± 194 of 4 4.78Up
Whole fly86 ± 64 of 4



(CG5151):

Annotation Number : HDC10414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036576
Gbrowse : chr3L:16141229-16142107 (-) // 100.0 //
Probeset : 1632132_at
Accessions : protein= NP_648844; /// NP_996104;, nucleotide= NM_140587; /// NM_206382;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036576.
BDGP gene expression has embryonic in situ data for CG5151: 8 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0036576 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 01 of 4 1.10None
Head5 ± 00 of 4 0.60None
Eye16 ± 24 of 4 1.98None
Thoracicoabdominal ganglion8 ± 10 of 4 1.00None
Salivary gland6 ± 30 of 4 0.80None
Crop15 ± 20 of 4 1.90Up
Midgut21 ± 10 of 4 2.60Up
Tubule15 ± 10 of 4 1.80Up
Hindgut17 ± 21 of 4 2.10Up
Heart21 ± 34 of 4 2.66Up
Fat body19 ± 50 of 4 2.34Up
Ovary8 ± 10 of 4 1.10None
Testis1 ± 00 of 4 0.20Down
Male accessory glands10 ± 10 of 4 1.30None
Virgin spermatheca9 ± 10 of 4 1.16None
Mated spermatheca11 ± 30 of 4 1.36None
Adult carcass20 ± 50 of 4 2.40None
Larval CNS10 ± 20 of 4 1.27None
Larval Salivary gland15 ± 10 of 4 1.88Up
Larval midgut22 ± 23 of 4 2.79Up
Larval tubule27 ± 23 of 4 3.30Up
Larval hindgut17 ± 03 of 4 2.17Up
Larval fat body26 ± 22 of 4 3.20Up
Larval trachea16 ± 44 of 4 2.01Up
Larval carcass12 ± 10 of 4 1.48Up
S2 cells (growing)29 ± 14 of 4 3.57Up
Whole fly8 ± 11 of 4

Looking for FBgn0036576. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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