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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036577 through 18771 annotations produced 2 hits



(CG13073):

Annotation Number : CG13073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036577
Gbrowse : chr3L:16206150-16207200 (-) // 100.0 //
Probeset : 1632880_a_at
Accessions : protein= NP_648845; /// NP_730118;, nucleotide= NM_140588; /// NM_168654;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036577.
BioGrid reports that CG13073 interacts with CG3647 .
VDRC has 2 RNAi stocks for FBgn0036577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 10 of 4 0.40None
Head3 00 of 4 0.80None
Eye4 10 of 4 0.88None
Thoracicoabdominal ganglion2 10 of 4 0.60None
Salivary gland13 41 of 4 2.98None
Crop5 10 of 4 1.10None
Midgut9 10 of 4 2.10Up
Tubule5 10 of 4 1.10None
Hindgut12 20 of 4 2.70Up
Heart4 00 of 4 0.89None
Fat body6 60 of 4 1.46None
Ovary1 00 of 4 0.30None
Testis0 00 of 4 0.10None
Male accessory glands11 30 of 4 2.40None
Virgin spermatheca5 10 of 4 1.17None
Mated spermatheca5 10 of 4 1.14None
Adult carcass7 20 of 4 1.60None
Larval CNS2 20 of 4 0.55None
Larval Salivary gland5 10 of 4 1.12None
Larval midgut5 20 of 4 1.21None
Larval tubule2 00 of 4 0.50None
Larval hindgut6 10 of 4 1.41None
Larval fat body3 10 of 4 0.70None
Larval trachea4 20 of 4 1.05None
Larval carcass3 00 of 4 0.85None
S2 cells (growing)0 00 of 4 0.18None
Whole fly4 10 of 4



(CG13073):

Annotation Number : CG13073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036577
Gbrowse : chr3L:16206150-16207206 (-) // 100.0 //
Probeset : 1627304_at
Accessions : protein= NP_648845; /// NP_730118;, nucleotide= NM_140588; /// NM_168654;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036577.
BioGrid reports that CG13073 interacts with CG3647 .
VDRC has 2 RNAi stocks for FBgn0036577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.50None
Head1 10 of 4 0.70None
Eye5 20 of 4 2.33None
Thoracicoabdominal ganglion2 00 of 4 1.00None
Salivary gland7 20 of 4 2.98None
Crop1 00 of 4 0.70None
Midgut1 00 of 4 0.50None
Tubule2 00 of 4 1.10None
Hindgut5 10 of 4 2.20None
Heart1 00 of 4 0.49None
Fat body2 20 of 4 1.07None
Ovary0 00 of 4 0.30None
Testis1 00 of 4 0.60None
Male accessory glands4 10 of 4 1.90None
Virgin spermatheca1 00 of 4 0.76None
Mated spermatheca1 10 of 4 0.72None
Adult carcass1 00 of 4 0.80None
Larval CNS1 10 of 4 0.69None
Larval Salivary gland3 10 of 4 1.55None
Larval midgut2 10 of 4 1.02None
Larval tubule2 10 of 4 0.90None
Larval hindgut1 00 of 4 0.41None
Larval fat body4 10 of 4 1.90None
Larval trachea2 10 of 4 0.84None
Larval carcass0 00 of 4 0.36None
S2 cells (growing)1 00 of 4 0.68None
Whole fly2 00 of 4

Looking for FBgn0036577. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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