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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036579 through 18771 annotations produced 1 hits



(CG5027):

Annotation Number : CG5027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036579
Gbrowse : chr3L:16222205-16224241 (+) // 100.0 //
Probeset : 1639013_at
Accessions : protein= NP_648847;, nucleotide= NM_140590;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0036579.
BDGP gene expression has embryonic in situ data for CG5027: 27 pix of staining in 15 body parts.
BioGrid reports that CG5027 interacts with CG9107 CG9295 .
TRiP has 1 RNAi stocks for FBgn0036579 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain493 ± 104 of 4 3.40Up
Head500 ± 314 of 4 3.50Up
Eye1030 ± 494 of 4 7.13Up
Thoracicoabdominal ganglion381 ± 84 of 4 2.60Up
Salivary gland125 ± 64 of 4 0.86None
Crop165 ± 54 of 4 1.10None
Midgut129 ± 44 of 4 0.90None
Tubule188 ± 114 of 4 1.30Up
Hindgut148 ± 24 of 4 1.00None
Heart280 ± 104 of 4 1.94Up
Fat body236 ± 134 of 4 1.63Up
Ovary242 ± 74 of 4 1.70Up
Testis65 ± 24 of 4 0.50Down
Male accessory glands153 ± 64 of 4 1.10None
Virgin spermatheca299 ± 104 of 4 2.07Up
Mated spermatheca323 ± 224 of 4 2.24Up
Adult carcass169 ± 44 of 4 1.20Up
Larval CNS363 ± 164 of 4 2.51Up
Larval Salivary gland117 ± 64 of 4 0.81Down
Larval midgut139 ± 24 of 4 0.96None
Larval tubule377 ± 24 of 4 2.60Up
Larval hindgut163 ± 104 of 4 1.13None
Larval fat body203 ± 204 of 4 1.40None
Larval trachea130 ± 344 of 4 0.90None
Larval carcass177 ± 54 of 4 1.23Up
S2 cells (growing)138 ± 14 of 4 0.96None
Whole fly144 ± 74 of 4

Looking for FBgn0036579. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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