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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036580 through 18771 annotations produced 1 hits



Programmed Cell Death gene-5 (PDCD-5):

Annotation Number : CG13072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036580
Gbrowse : chr3L:16224177-16225132 (-) // 100.0 //
Probeset : 1640056_at
Accessions : protein= NP_648848;, nucleotide= NM_140591;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0036580.
BDGP gene expression has embryonic in situ data for PDCD-5: 8 pix of staining in 9 body parts.
BioGrid reports that CG13072 interacts with CG5792 .
VDRC has 4 RNAi stocks for FBgn0036580 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 ± 44 of 4 0.30Down
Head275 ± 54 of 4 0.50Down
Eye316 ± 134 of 4 0.58Down
Thoracicoabdominal ganglion215 ± 94 of 4 0.40Down
Salivary gland292 ± 14 of 4 0.53Down
Crop550 ± 184 of 4 1.00None
Midgut478 ± 194 of 4 0.90None
Tubule320 ± 114 of 4 0.60Down
Hindgut485 ± 104 of 4 0.90Down
Heart407 ± 74 of 4 0.74Down
Fat body314 ± 274 of 4 0.58Down
Ovary849 ± 184 of 4 1.60Up
Testis269 ± 44 of 4 0.50Down
Male accessory glands547 ± 334 of 4 1.00None
Virgin spermatheca402 ± 214 of 4 0.74Down
Mated spermatheca480 ± 134 of 4 0.88Down
Adult carcass286 ± 64 of 4 0.50Down
Larval CNS615 ± 444 of 4 1.12None
Larval Salivary gland565 ± 204 of 4 1.03None
Larval midgut453 ± 154 of 4 0.83Down
Larval tubule576 ± 134 of 4 1.10None
Larval hindgut609 ± 184 of 4 1.11None
Larval fat body349 ± 244 of 4 0.60Down
Larval trachea1262 ± 724 of 4 2.31Up
Larval carcass845 ± 444 of 4 1.54Up
S2 cells (growing)423 ± 84 of 4 0.77Down
Whole fly547 ± 204 of 4

Looking for FBgn0036580. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime