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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036584 through 18771 annotations produced 1 hits



(CG13054):

Annotation Number : CG13054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036584
Gbrowse : chr3L:16249190-16250135 (-) // 100.0 //
Probeset : 1632706_at
Accessions : protein= NP_648852;, nucleotide= NM_140595;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036584.
BioGrid reports that CG13054 interacts with CG5602 .
VDRC has 1 RNAi stocks for FBgn0036584 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 14 of 4 6.70Up
Head9 12 of 4 2.30Up
Eye4 10 of 4 1.07None
Thoracicoabdominal ganglion15 23 of 4 3.80Up
Salivary gland10 30 of 4 2.54None
Crop3 00 of 4 0.90None
Midgut12 50 of 4 3.20None
Tubule8 00 of 4 2.00Up
Hindgut7 00 of 4 1.90Up
Heart3 20 of 4 0.88None
Fat body7 50 of 4 1.88None
Ovary6 10 of 4 1.70None
Testis2 00 of 4 0.60None
Male accessory glands6 20 of 4 1.60None
Virgin spermatheca1 00 of 4 0.45None
Mated spermatheca3 10 of 4 0.81None
Adult carcass6 20 of 4 1.70None
Larval CNS11 20 of 4 2.83Up
Larval Salivary gland9 20 of 4 2.32None
Larval midgut12 00 of 4 3.09Up
Larval tubule6 20 of 4 1.70None
Larval hindgut3 10 of 4 0.98None
Larval fat body5 20 of 4 1.40None
Larval trachea7 10 of 4 1.87Up
Larval carcass4 00 of 4 1.12None
S2 cells (growing)7 20 of 4 1.88None
Whole fly4 11 of 4

Looking for FBgn0036584. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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