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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036585 through 18771 annotations produced 1 hits



(CG13071):

Annotation Number : CG13071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036585
Gbrowse : chr3L:16254852-16256220 (+) // 100.0 //
Probeset : 1624403_at
Accessions : protein= NP_648853;, nucleotide= NM_140596;
FlyMine data for FBgn0036585.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.30None
Head10 ± 32 of 4 3.20None
Eye40 ± 83 of 412.79Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland2 ± 10 of 4 0.76None
Crop2 ± 10 of 4 0.80None
Midgut4 ± 10 of 4 1.40None
Tubule3 ± 10 of 4 1.00None
Hindgut4 ± 10 of 4 1.30None
Heart2 ± 00 of 4 0.83None
Fat body4 ± 20 of 4 1.36None
Ovary1 ± 00 of 4 0.30None
Testis3 ± 11 of 4 1.10None
Male accessory glands6 ± 11 of 4 2.20None
Virgin spermatheca2 ± 00 of 4 0.62None
Mated spermatheca3 ± 10 of 4 1.06None
Adult carcass5 ± 10 of 4 1.90None
Larval CNS2 ± 20 of 4 0.94None
Larval Salivary gland3 ± 10 of 4 1.05None
Larval midgut3 ± 10 of 4 1.22None
Larval tubule3 ± 10 of 4 1.00None
Larval hindgut1 ± 00 of 4 0.39None
Larval fat body3 ± 10 of 4 1.20None
Larval trachea6 ± 61 of 4 2.08None
Larval carcass3 ± 10 of 4 1.04None
S2 cells (growing)0 ± 00 of 4 0.31None
Whole fly3 ± 10 of 4

Looking for FBgn0036585. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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