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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036591 through 18771 annotations produced 1 hits



(CG13050):

Annotation Number : CG13050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036591
Gbrowse : chr3L:16271757-16272309 (-) // 100.0 //
Probeset : 1629801_at
Accessions : protein= NP_648859;, nucleotide= NM_140602;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036591.
BioGrid reports that CG13050 interacts with CG7171 CG9192 .
VDRC has 2 RNAi stocks for FBgn0036591 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.20None
Head0 ± 00 of 4 0.50None
Eye3 ± 01 of 4 2.30None
Thoracicoabdominal ganglion0 ± 00 of 4 0.70None
Salivary gland14 ± 50 of 410.41None
Crop4 ± 20 of 4 3.30None
Midgut2 ± 10 of 4 2.00None
Tubule0 ± 00 of 4 0.60Down
Hindgut1 ± 00 of 4 0.80None
Heart1 ± 00 of 4 0.93None
Fat body0 ± 00 of 4 0.54None
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.70None
Male accessory glands4 ± 20 of 4 3.10None
Virgin spermatheca1 ± 00 of 4 0.91None
Mated spermatheca4 ± 20 of 4 3.48None
Adult carcass4 ± 30 of 4 2.90None
Larval CNS2 ± 20 of 4 1.81None
Larval Salivary gland5 ± 30 of 4 3.67None
Larval midgut2 ± 10 of 4 2.00None
Larval tubule0 ± 00 of 4 0.50None
Larval hindgut1 ± 00 of 4 0.70None
Larval fat body1 ± 00 of 4 0.90None
Larval trachea1 ± 00 of 4 0.91None
Larval carcass2 ± 00 of 4 1.52None
S2 cells (growing)1 ± 00 of 4 1.43None
Whole fly1 ± 00 of 4

Looking for FBgn0036591. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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