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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036592 through 18771 annotations produced 1 hits



(CG13049):

Annotation Number : CG13049
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036592
Gbrowse : chr3L:16274228-16275092 (-) // 100.0 //
Probeset : 1632690_a_at
Accessions : protein= NP_648860; /// NP_730133;, nucleotide= NM_140603; /// NM_168657;
FlyMine data for FBgn0036592.
BDGP gene expression has embryonic in situ data for CG13049: 12 pix of staining in 7 body parts.
BioGrid reports that CG13049 interacts with CG15422 CG2116 CG7347 CG8942 .
VDRC has 2 RNAi stocks for FBgn0036592 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 13 of 4 0.50None
Head9 ± 22 of 4 0.50None
Eye5 ± 20 of 4 0.29None
Thoracicoabdominal ganglion16 ± 32 of 4 0.90None
Salivary gland25 ± 11 of 4 1.44None
Crop19 ± 22 of 4 1.10None
Midgut10 ± 40 of 4 0.60None
Tubule9 ± 10 of 4 0.50Down
Hindgut11 ± 20 of 4 0.60None
Heart8 ± 10 of 4 0.45None
Fat body26 ± 40 of 4 1.46None
Ovary8 ± 10 of 4 0.50None
Testis39 ± 24 of 4 2.20Up
Male accessory glands10 ± 60 of 4 0.60None
Virgin spermatheca14 ± 20 of 4 0.83None
Mated spermatheca14 ± 20 of 4 0.79None
Adult carcass31 ± 72 of 4 1.80None
Larval CNS4 ± 21 of 4 0.28None
Larval Salivary gland6 ± 11 of 4 0.38None
Larval midgut15 ± 40 of 4 0.85None
Larval tubule11 ± 10 of 4 0.60None
Larval hindgut8 ± 20 of 4 0.45None
Larval fat body14 ± 31 of 4 0.80None
Larval trachea78 ± 194 of 4 4.44Up
Larval carcass17 ± 41 of 4 0.99None
S2 cells (growing)16 ± 32 of 4 0.92None
Whole fly17 ± 52 of 4

Looking for FBgn0036592. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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