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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036593 through 18771 annotations produced 1 hits


Annotation Number : CG13048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036593
Gbrowse : chr3L:16276077-16276757 (-) // 100.0 //
Probeset : 1625371_at
Accessions : protein= NP_648861;, nucleotide= NM_140604;
FlyMine data for FBgn0036593.
VDRC has 2 RNAi stocks for FBgn0036593 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 20 of 4 0.70None
Head4 10 of 4 0.90None
Eye5 10 of 4 1.17None
Thoracicoabdominal ganglion5 10 of 4 1.20None
Salivary gland26 40 of 4 5.48Up
Crop1 00 of 4 0.40Down
Midgut9 40 of 4 2.00None
Tubule12 10 of 4 2.60Up
Hindgut4 10 of 4 1.00None
Heart2 10 of 4 0.48None
Fat body5 30 of 4 1.13None
Ovary1 00 of 4 0.40Down
Testis1 00 of 4 0.20Down
Male accessory glands6 20 of 4 1.40None
Virgin spermatheca8 20 of 4 1.76None
Mated spermatheca7 10 of 4 1.58None
Adult carcass2 10 of 4 0.60None
Larval CNS6 10 of 4 1.25None
Larval Salivary gland17 10 of 4 3.59Up
Larval midgut19 30 of 4 3.90Up
Larval tubule13 10 of 4 2.80Up
Larval hindgut12 10 of 4 2.62Up
Larval fat body6 20 of 4 1.30None
Larval trachea0 00 of 4 0.18Down
Larval carcass3 10 of 4 0.81None
S2 cells (growing)0 00 of 4 0.19Down
Whole fly4 00 of 4

Looking for FBgn0036593. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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