FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036596 through 18771 annotations produced 1 hits

(CG13045):

Annotation Number : CG13045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036596
Gbrowse : chr3L:16283333-16283897 (-) // 100.0 //
Probeset : 1637211_at
Accessions : protein= NP_648864;, nucleotide= NM_140607;
FlyMine data for FBgn0036596.
BioGrid reports that CG13045 interacts with CG13066 CG13285 CG13731 CG15224 CG17777 CG17894 CG18290 CG3056 CG31673 CG3510 CG5212 CG6660 CG8597 CG8867 CG9745 CG9027 .
VDRC has 1 RNAi stocks for FBgn0036596 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.90	None
Head	3 ± 2	1 of 4	0.60	None
Eye	2 ± 1	0 of 4	0.36	None
Thoracicoabdominal ganglion	7 ± 1	0 of 4	1.20	None
Salivary gland	12 ± 1	1 of 4	1.99	Up
Crop	11 ± 1	2 of 4	1.70	None
Midgut	10 ± 2	0 of 4	1.70	None
Tubule	5 ± 0	0 of 4	0.80	Down
Hindgut	13 ± 0	2 of 4	2.10	Up
Heart	4 ± 1	1 of 4	0.67	None
Fat body	8 ± 3	1 of 4	1.37	None
Ovary	6 ± 1	1 of 4	1.00	None
Testis	9 ± 1	3 of 4	1.50	None
Male accessory glands	12 ± 2	1 of 4	2.00	None
Virgin spermatheca	7 ± 1	2 of 4	1.19	None
Mated spermatheca	10 ± 1	1 of 4	1.58	None
Adult carcass	12 ± 3	1 of 4	2.00	None
Larval CNS	5 ± 3	2 of 4	0.91	None
Larval Salivary gland	13 ± 2	3 of 4	2.17	Up
Larval midgut	13 ± 3	1 of 4	2.15	None
Larval tubule	8 ± 0	0 of 4	1.30	None
Larval hindgut	2 ± 0	0 of 4	0.36	None
Larval fat body	11 ± 1	1 of 4	1.80	None
Larval trachea	24 ± 7	4 of 4	3.94	Up
Larval carcass	6 ± 2	0 of 4	1.05	None
S2 cells (growing)	6 ± 1	1 of 4	0.97	None
Whole fly	6 ± 1	1 of 4

Looking for FBgn0036596. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720