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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036598 through 18771 annotations produced 1 hits



/// Imaginal disc growth factor 4 (CG4982 /// Idgf4):

Annotation Number : CG4982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036598
Gbrowse : chr3L:16294569-16295128 (+) // 100.0 //
Probeset : 1641631_at
Accessions : protein= NP_511101; /// NP_648866; /// NP_727374;, nucleotide= NM_078546; /// NM_140609; /// NM_167207;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0036598.
VDRC has 4 RNAi stocks for FBgn0036598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.50Down
Head1 ± 00 of 4 0.70None
Eye10 ± 11 of 4 6.44Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.80None
Salivary gland1 ± 00 of 4 1.06None
Crop1 ± 00 of 4 0.90None
Midgut1 ± 00 of 4 1.00None
Tubule1 ± 00 of 4 0.90None
Hindgut1 ± 00 of 4 0.90None
Heart0 ± 00 of 4 0.48Down
Fat body5 ± 30 of 4 3.16None
Ovary0 ± 00 of 4 0.50Down
Testis0 ± 00 of 4 0.50None
Male accessory glands4 ± 10 of 4 2.80None
Virgin spermatheca1 ± 00 of 4 1.03None
Mated spermatheca1 ± 00 of 4 0.89None
Adult carcass1 ± 00 of 4 1.10None
Larval CNS1 ± 00 of 4 0.83None
Larval Salivary gland2 ± 00 of 4 1.43None
Larval midgut1 ± 00 of 4 0.67None
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut0 ± 00 of 4 0.44Down
Larval fat body4 ± 20 of 4 3.00None
Larval trachea56 ± 94 of 435.73Up
Larval carcass49 ± 142 of 431.14Up
S2 cells (growing)1 ± 00 of 4 0.63None
Whole fly1 ± 00 of 4

Looking for FBgn0036598. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime