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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036603 through 18771 annotations produced 1 hits



(CG13062):

Annotation Number : CG13062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036603
Gbrowse : chr3L:16307626-16308047 (+) // 100.0 //
Probeset : 1624606_at
Accessions : protein= NP_648871;, nucleotide= NM_140614;
FlyMine data for FBgn0036603.
BDGP gene expression has embryonic in situ data for CG13062: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 30 of 4 1.10None
Head8 ± 21 of 4 0.90None
Eye17 ± 24 of 4 1.93None
Thoracicoabdominal ganglion11 ± 31 of 4 1.20None
Salivary gland20 ± 20 of 4 2.22Up
Crop5 ± 10 of 4 0.60None
Midgut6 ± 10 of 4 0.70None
Tubule12 ± 00 of 4 1.30Up
Hindgut7 ± 20 of 4 0.80None
Heart3 ± 10 of 4 0.37None
Fat body6 ± 30 of 4 0.69None
Ovary3 ± 10 of 4 0.40None
Testis6 ± 10 of 4 0.70None
Male accessory glands13 ± 40 of 4 1.40None
Virgin spermatheca8 ± 20 of 4 0.95None
Mated spermatheca6 ± 30 of 4 0.72None
Adult carcass13 ± 30 of 4 1.40None
Larval CNS8 ± 20 of 4 0.88None
Larval Salivary gland13 ± 30 of 4 1.43None
Larval midgut9 ± 10 of 4 1.07None
Larval tubule11 ± 20 of 4 1.30None
Larval hindgut12 ± 10 of 4 1.39None
Larval fat body9 ± 10 of 4 1.00None
Larval trachea9 ± 30 of 4 1.01None
Larval carcass9 ± 10 of 4 1.08None
S2 cells (growing)10 ± 10 of 4 1.16None
Whole fly9 ± 20 of 4

Looking for FBgn0036603. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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