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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036605 through 18771 annotations produced 1 hits


Annotation Number : CG13041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036605
Gbrowse : chr3L:16312051-16312620 (-) // 100.0 //
Probeset : 1630020_at
Accessions : protein= NP_648872;, nucleotide= NM_140615;
FlyMine data for FBgn0036605.
BioGrid reports that CG13041 interacts with CG14030 CG15529 CG17377 CG33017 CG6459 CG7524 .
VDRC has 5 RNAi stocks for FBgn0036605 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30None
Head2 11 of 4 0.30None
Eye3 00 of 4 0.43None
Thoracicoabdominal ganglion3 00 of 4 0.40None
Salivary gland5 10 of 4 0.60None
Crop2 00 of 4 0.30None
Midgut2 00 of 4 0.30None
Tubule3 00 of 4 0.40Down
Hindgut1 00 of 4 0.20None
Heart1 00 of 4 0.15None
Fat body4 41 of 4 0.55None
Ovary1 00 of 4 0.20None
Testis1 01 of 4 0.20None
Male accessory glands5 20 of 4 0.70None
Virgin spermatheca5 03 of 4 0.64None
Mated spermatheca6 12 of 4 0.74None
Adult carcass4 10 of 4 0.50None
Larval CNS7 24 of 4 0.86None
Larval Salivary gland3 10 of 4 0.41None
Larval midgut3 11 of 4 0.38None
Larval tubule2 00 of 4 0.30None
Larval hindgut2 11 of 4 0.27None
Larval fat body2 10 of 4 0.30None
Larval trachea3 10 of 4 0.44None
Larval carcass12 34 of 4 1.42None
S2 cells (growing)1 10 of 4 0.19None
Whole fly8 23 of 4

Looking for FBgn0036605. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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