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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036606 through 18771 annotations produced 1 hits



(CG13060):

Annotation Number : CG13060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036606
Gbrowse : chr3L:16312960-16313562 (+) // 99.09 //
Probeset : 1632942_at
Accessions : protein= NP_648873;, nucleotide= NM_140616;
FlyMine data for FBgn0036606.
BDGP gene expression has embryonic in situ data for CG13060: 4 pix of staining in 1 body parts.
BioGrid reports that CG13060 interacts with CG13405 .
VDRC has 1 RNAi stocks for FBgn0036606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.60None
Head2 ± 00 of 4 0.30None
Eye3 ± 00 of 4 0.43None
Thoracicoabdominal ganglion5 ± 01 of 4 0.70None
Salivary gland4 ± 10 of 4 0.66None
Crop4 ± 10 of 4 0.60None
Midgut4 ± 10 of 4 0.60None
Tubule3 ± 00 of 4 0.40Down
Hindgut3 ± 11 of 4 0.50None
Heart4 ± 01 of 4 0.58None
Fat body6 ± 21 of 4 0.89None
Ovary2 ± 00 of 4 0.30None
Testis2 ± 00 of 4 0.40None
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca3 ± 10 of 4 0.49None
Mated spermatheca1 ± 00 of 4 0.14Down
Adult carcass7 ± 31 of 4 1.10None
Larval CNS3 ± 04 of 4 0.54None
Larval Salivary gland2 ± 10 of 4 0.28None
Larval midgut1 ± 00 of 4 0.16Down
Larval tubule3 ± 00 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.32None
Larval fat body5 ± 22 of 4 0.80None
Larval trachea2 ± 32 of 4 0.39None
Larval carcass7 ± 13 of 4 1.04None
S2 cells (growing)3 ± 01 of 4 0.44None
Whole fly7 ± 13 of 4

Looking for FBgn0036606. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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