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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036607 through 18771 annotations produced 1 hits



(CG13059):

Annotation Number : CG13059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036607
Gbrowse : chr3L:16316830-16317363 (+) // 100.0 //
Probeset : 1625884_at
Accessions : protein= NP_648874;, nucleotide= NM_140617;
FlyMine data for FBgn0036607.
VDRC has 2 RNAi stocks for FBgn0036607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 20 of 4 0.20Down
Head12 ± 30 of 4 0.30Down
Eye8 ± 30 of 4 0.19Down
Thoracicoabdominal ganglion12 ± 00 of 4 0.30Down
Salivary gland37 ± 50 of 4 0.83None
Crop12 ± 31 of 4 0.30Down
Midgut58 ± 51 of 4 1.30None
Tubule8 ± 10 of 4 0.20Down
Hindgut10 ± 30 of 4 0.20Down
Heart2 ± 10 of 4 0.06Down
Fat body7 ± 50 of 4 0.16Down
Ovary9 ± 20 of 4 0.20Down
Testis13 ± 30 of 4 0.30Down
Male accessory glands17 ± 40 of 4 0.40Down
Virgin spermatheca8 ± 20 of 4 0.19Down
Mated spermatheca2 ± 00 of 4 0.05Down
Adult carcass15 ± 50 of 4 0.30Down
Larval CNS9 ± 40 of 4 0.22Down
Larval Salivary gland11 ± 30 of 4 0.26Down
Larval midgut16 ± 50 of 4 0.36Down
Larval tubule21 ± 30 of 4 0.50None
Larval hindgut19 ± 30 of 4 0.44Down
Larval fat body14 ± 40 of 4 0.30Down
Larval trachea12 ± 81 of 4 0.29Down
Larval carcass12 ± 40 of 4 0.28Down
S2 cells (growing)8 ± 10 of 4 0.18Down
Whole fly44 ± 83 of 4

Looking for FBgn0036607. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime