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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036608 through 18771 annotations produced 1 hits



(CG13040):

Annotation Number : CG13040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036608
Gbrowse : chr3L:16318245-16318868 (-) // 100.0 //
Probeset : 1634530_at
Accessions : protein= NP_648875;, nucleotide= NM_140618;
FlyMine data for FBgn0036608.
BioGrid reports that CG13040 interacts with CG13095 CG15422 CG30084 CG3891 CG4760 CG33197 .
VDRC has 3 RNAi stocks for FBgn0036608 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.30Down
Head29 ± 40 of 4 1.50None
Eye18 ± 10 of 4 0.97None
Thoracicoabdominal ganglion14 ± 30 of 4 0.70None
Salivary gland23 ± 70 of 4 1.20None
Crop10 ± 20 of 4 0.60Down
Midgut25 ± 10 of 4 1.30Up
Tubule8 ± 10 of 4 0.50Down
Hindgut9 ± 30 of 4 0.50Down
Heart15 ± 20 of 4 0.80None
Fat body38 ± 100 of 4 1.96Up
Ovary3 ± 00 of 4 0.20Down
Testis64 ± 44 of 4 3.30Up
Male accessory glands37 ± 40 of 4 1.90Up
Virgin spermatheca18 ± 40 of 4 0.92None
Mated spermatheca27 ± 50 of 4 1.40None
Adult carcass31 ± 40 of 4 1.60None
Larval CNS5 ± 10 of 4 0.28Down
Larval Salivary gland35 ± 00 of 4 1.82Up
Larval midgut14 ± 40 of 4 0.73None
Larval tubule4 ± 00 of 4 0.20Down
Larval hindgut5 ± 00 of 4 0.28Down
Larval fat body13 ± 10 of 4 0.70None
Larval trachea31 ± 60 of 4 1.61Up
Larval carcass31 ± 60 of 4 1.60None
S2 cells (growing)9 ± 20 of 4 0.51Down
Whole fly19 ± 10 of 4

Looking for FBgn0036608. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime