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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036609 through 18771 annotations produced 1 hits



(CG13039):

Annotation Number : CG13039
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036609
Gbrowse : chr3L:16319351-16319862 (-) // 100.0 //
Probeset : 1627240_at
Accessions : protein= NP_648876;, nucleotide= NM_140619;
FlyMine data for FBgn0036609.
VDRC has 2 RNAi stocks for FBgn0036609 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye3 11 of 4 0.11Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland7 20 of 4 0.22Down
Crop2 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart2 00 of 4 0.07Down
Fat body1 00 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis375 114 of 411.20Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca1 00 of 4 0.04Down
Adult carcass5 20 of 4 0.20Down
Larval CNS1 10 of 4 0.06Down
Larval Salivary gland2 10 of 4 0.08Down
Larval midgut1 00 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.06Down
Larval fat body31 133 of 4 0.90None
Larval trachea2 20 of 4 0.07Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.04Down
Whole fly33 34 of 4

Looking for FBgn0036609. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime