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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036610 through 18771 annotations produced 1 hits



(CG13058):

Annotation Number : CG13058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036610
Gbrowse : chr3L:16321967-16322502 (+) // 100.0 //
Probeset : 1629140_at
Accessions : protein= NP_648877;, nucleotide= NM_140620;
FlyMine data for FBgn0036610.
VDRC has 2 RNAi stocks for FBgn0036610 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40None
Head6 ± 11 of 4 0.90None
Eye6 ± 22 of 4 0.96None
Thoracicoabdominal ganglion4 ± 20 of 4 0.60None
Salivary gland7 ± 00 of 4 1.05None
Crop6 ± 10 of 4 0.90None
Midgut15 ± 20 of 4 2.10Up
Tubule2 ± 00 of 4 0.40Down
Hindgut7 ± 10 of 4 1.10None
Heart5 ± 10 of 4 0.77None
Fat body8 ± 20 of 4 1.21None
Ovary4 ± 10 of 4 0.60None
Testis2 ± 00 of 4 0.40None
Male accessory glands13 ± 10 of 4 2.00Up
Virgin spermatheca5 ± 00 of 4 0.72None
Mated spermatheca3 ± 10 of 4 0.53None
Adult carcass4 ± 10 of 4 0.60None
Larval CNS4 ± 10 of 4 0.59None
Larval Salivary gland2 ± 00 of 4 0.35None
Larval midgut14 ± 10 of 4 1.98Up
Larval tubule7 ± 10 of 4 1.10None
Larval hindgut21 ± 13 of 4 3.10Up
Larval fat body6 ± 10 of 4 0.90None
Larval trachea7 ± 40 of 4 1.04None
Larval carcass10 ± 00 of 4 1.49None
S2 cells (growing)5 ± 10 of 4 0.77None
Whole fly7 ± 11 of 4

Looking for FBgn0036610. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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