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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036612 through 18771 annotations produced 1 hits



(CG4998):

Annotation Number : CG4998
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036612
Gbrowse : chr3L:16332098-16338348 (+) // 100.0 //
Probeset : 1624573_at
Accessions : protein= NP_001036609; /// NP_648878;, nucleotide= NM_001043144; /// NM_140621;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036612.
BDGP gene expression has embryonic in situ data for CG4998: 4 pix of staining in 1 body parts.
Homophila reports that CG4998 is a close match (6e-11) to human gene C2 (NP_000054), a gene associated with C2 deficiency (3);{Macular degeneration, age-related, reduced risk of}, 603075 (3).
BioGrid reports that CG4998 interacts with CG5094 CG5272 CG5352 CG5700 CG6459 CG8882 CG9526 .
TRiP has 1 RNAi stocks for FBgn0036612 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 0.30None
Head3 ± 10 of 4 0.10None
Eye19 ± 44 of 4 0.68None
Thoracicoabdominal ganglion8 ± 10 of 4 0.30None
Salivary gland19 ± 02 of 4 0.65None
Crop13 ± 23 of 4 0.50None
Midgut9 ± 10 of 4 0.30None
Tubule10 ± 12 of 4 0.40Down
Hindgut14 ± 34 of 4 0.50None
Heart4 ± 00 of 4 0.17None
Fat body14 ± 44 of 4 0.48None
Ovary35 ± 54 of 4 1.20None
Testis13 ± 24 of 4 0.50None
Male accessory glands9 ± 11 of 4 0.30None
Virgin spermatheca18 ± 24 of 4 0.62None
Mated spermatheca30 ± 94 of 4 1.05None
Adult carcass8 ± 41 of 4 0.30None
Larval CNS10 ± 34 of 4 0.37None
Larval Salivary gland3 ± 10 of 4 0.13None
Larval midgut9 ± 13 of 4 0.32None
Larval tubule6 ± 00 of 4 0.20None
Larval hindgut43 ± 84 of 4 1.48None
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea30 ± 224 of 4 1.04None
Larval carcass23 ± 14 of 4 0.81None
S2 cells (growing)5 ± 00 of 4 0.17None
Whole fly29 ± 84 of 4

Looking for FBgn0036612. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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