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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036614 through 18771 annotations produced 1 hits



(CG4925):

Annotation Number : CG4925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036614
Gbrowse : chr3L:16341844-16344998 (-) // 100.0 //
Probeset : 1625422_at
Accessions : protein= NP_648879;, nucleotide= NM_140622;
Interpro : 0004871 // signal transducer activity // non-traceable author statement /// 0005515 // protein binding // inferred from
FlyMine data for FBgn0036614.
BioGrid reports that CG4925 interacts with CG7785 CG6156 .
VDRC has 2 RNAi stocks for FBgn0036614 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 34 of 4 1.40Up
Head36 14 of 4 0.60Down
Eye62 44 of 4 1.06None
Thoracicoabdominal ganglion83 24 of 4 1.40Up
Salivary gland109 54 of 4 1.87Up
Crop51 24 of 4 0.90None
Midgut57 14 of 4 1.00None
Tubule56 24 of 4 1.00None
Hindgut49 24 of 4 0.80None
Heart23 14 of 4 0.41Down
Fat body26 54 of 4 0.46Down
Ovary125 24 of 4 2.10Up
Testis93 14 of 4 1.60Up
Male accessory glands48 24 of 4 0.80None
Virgin spermatheca29 34 of 4 0.50Down
Mated spermatheca27 34 of 4 0.47Down
Adult carcass33 34 of 4 0.60Down
Larval CNS70 44 of 4 1.21Up
Larval Salivary gland76 14 of 4 1.29Up
Larval midgut70 34 of 4 1.19None
Larval tubule90 54 of 4 1.50Up
Larval hindgut51 14 of 4 0.88None
Larval fat body31 44 of 4 0.50Down
Larval trachea35 44 of 4 0.61Down
Larval carcass32 14 of 4 0.55Down
S2 cells (growing)50 14 of 4 0.87None
Whole fly58 34 of 4

Looking for FBgn0036614. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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