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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036615 through 18771 annotations produced 1 hits



(CG4933):

Annotation Number : CG4933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036615
Gbrowse : chr3L:16345139-16346386 (+) // 99.65 //
Probeset : 1641223_at
Accessions : protein= NP_648880;, nucleotide= NM_140623;
Interpro : 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity //
FlyMine data for FBgn0036615.
BioGrid reports that CG4933 interacts with CG9511 .
TRiP has 1 RNAi stocks for FBgn0036615 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036615 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 34 of 4 0.60Down
Head46 ± 34 of 4 0.60Down
Eye39 ± 14 of 4 0.51Down
Thoracicoabdominal ganglion51 ± 24 of 4 0.70Down
Salivary gland67 ± 44 of 4 0.88None
Crop92 ± 64 of 4 1.20None
Midgut76 ± 44 of 4 1.00None
Tubule96 ± 44 of 4 1.30Up
Hindgut66 ± 24 of 4 0.90None
Heart40 ± 24 of 4 0.53Down
Fat body43 ± 44 of 4 0.57Down
Ovary179 ± 54 of 4 2.30Up
Testis22 ± 14 of 4 0.30Down
Male accessory glands83 ± 54 of 4 1.10None
Virgin spermatheca50 ± 24 of 4 0.66Down
Mated spermatheca60 ± 24 of 4 0.79None
Adult carcass48 ± 44 of 4 0.60Down
Larval CNS104 ± 104 of 4 1.35Up
Larval Salivary gland146 ± 44 of 4 1.90Up
Larval midgut47 ± 24 of 4 0.62Down
Larval tubule102 ± 84 of 4 1.30None
Larval hindgut68 ± 14 of 4 0.90None
Larval fat body66 ± 44 of 4 0.90None
Larval trachea89 ± 64 of 4 1.16None
Larval carcass63 ± 34 of 4 0.82None
S2 cells (growing)94 ± 24 of 4 1.22None
Whole fly76 ± 74 of 4

Looking for FBgn0036615. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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