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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036620 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3L:16361506-16362618 (+) // 100.0 //):

Annotation Number : CG4842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1634148_at
Accessions : protein= EC:1.1.1.1, nucleotide=
Interpro : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
Homophila reports that CG4842 is a close match (8e-27) to human gene (NP_000851), a gene associated with .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.10Down
Head637 214 of 4 7.20Up
Eye3057 2974 of 434.52Up
Thoracicoabdominal ganglion5 10 of 4 0.10Down
Salivary gland15 51 of 4 0.18Down
Crop43 24 of 4 0.50Down
Midgut24 34 of 4 0.30Down
Tubule20 13 of 4 0.20Down
Hindgut67 04 of 4 0.80None
Heart11 23 of 4 0.13Down
Fat body9 22 of 4 0.10Down
Ovary124 74 of 4 1.40Up
Testis6 12 of 4 0.10Down
Male accessory glands6 10 of 4 0.10Down
Virgin spermatheca9 22 of 4 0.11Down
Mated spermatheca6 10 of 4 0.07Down
Adult carcass15 12 of 4 0.20Down
Larval CNS5 30 of 4 0.06Down
Larval Salivary gland4 10 of 4 0.05Down
Larval midgut21 20 of 4 0.25Down
Larval tubule13 13 of 4 0.10Down
Larval hindgut115 64 of 4 1.30Up
Larval fat body179 434 of 4 2.00None
Larval trachea37 621 of 4 0.43None
Larval carcass34 44 of 4 0.39Down
S2 cells (growing)14 13 of 4 0.16Down
Whole fly88 74 of 4

Looking for FBgn0036620. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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