FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036621 through 18771 annotations produced 1 hits

roquin (roq):

Annotation Number : CG16807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036621
Gbrowse : chr3L:16366152-16371750 (-) // 100.0 //
Probeset : 1638722_at
Accessions : protein= NP_648886;, nucleotide= NM_140629;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0036621.
BDGP gene expression has embryonic in situ data for CG16807: 13 pix of staining in 9 body parts.
BioGrid reports that CG16807 interacts with CG16899 CG4394 .
VDRC has 1 RNAi stocks for FBgn0036621 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	74 ± 5	4 of 4	0.80	None
Head	66 ± 8	4 of 4	0.70	Down
Eye	50 ± 1	4 of 4	0.54	Down
Thoracicoabdominal ganglion	50 ± 6	4 of 4	0.50	Down
Salivary gland	165 ± 22	4 of 4	1.78	Up
Crop	127 ± 4	4 of 4	1.40	Up
Midgut	124 ± 5	4 of 4	1.30	Up
Tubule	54 ± 1	4 of 4	0.60	Down
Hindgut	105 ± 5	4 of 4	1.10	None
Heart	105 ± 6	4 of 4	1.14	None
Fat body	115 ± 11	4 of 4	1.24	Up
Ovary	158 ± 4	4 of 4	1.70	Up
Testis	19 ± 2	4 of 4	0.20	Down
Male accessory glands	69 ± 4	4 of 4	0.80	Down
Virgin spermatheca	57 ± 2	4 of 4	0.62	Down
Mated spermatheca	62 ± 2	4 of 4	0.67	Down
Adult carcass	92 ± 4	4 of 4	1.00	None
Larval CNS	131 ± 16	4 of 4	1.41	Up
Larval Salivary gland	369 ± 38	4 of 4	3.98	Up
Larval midgut	92 ± 4	4 of 4	1.00	None
Larval tubule	240 ± 3	4 of 4	2.60	Up
Larval hindgut	148 ± 6	4 of 4	1.59	Up
Larval fat body	164 ± 11	4 of 4	1.80	Up
Larval trachea	176 ± 20	4 of 4	1.90	Up
Larval carcass	214 ± 11	4 of 4	2.30	Up
S2 cells (growing)	197 ± 6	4 of 4	2.13	Up
Whole fly	93 ± 4	4 of 4

Looking for FBgn0036621. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720