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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036629 through 18771 annotations produced 1 hits



(CG4573):

Annotation Number : CG4573
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036629
Gbrowse : chr3L:16408390-16410265 (-) // 100.0 //
Probeset : 1634404_at
Accessions : protein= NP_648894;, nucleotide= NM_140637;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // i
FlyMine data for FBgn0036629.
VDRC has 3 RNAi stocks for FBgn0036629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 0.80Down
Head16 ± 24 of 4 0.60Down
Eye12 ± 14 of 4 0.44Down
Thoracicoabdominal ganglion26 ± 14 of 4 0.90None
Salivary gland26 ± 34 of 4 0.93None
Crop24 ± 14 of 4 0.90Down
Midgut24 ± 14 of 4 0.80None
Tubule40 ± 14 of 4 1.40Up
Hindgut26 ± 24 of 4 0.90None
Heart26 ± 24 of 4 0.91None
Fat body28 ± 54 of 4 0.99None
Ovary64 ± 14 of 4 2.20Up
Testis8 ± 14 of 4 0.30Down
Male accessory glands22 ± 34 of 4 0.80None
Virgin spermatheca22 ± 24 of 4 0.78None
Mated spermatheca18 ± 04 of 4 0.65Down
Adult carcass19 ± 14 of 4 0.70Down
Larval CNS28 ± 44 of 4 0.99None
Larval Salivary gland36 ± 34 of 4 1.26None
Larval midgut21 ± 24 of 4 0.72Down
Larval tubule29 ± 04 of 4 1.00None
Larval hindgut33 ± 34 of 4 1.15None
Larval fat body13 ± 23 of 4 0.50Down
Larval trachea28 ± 74 of 4 0.99None
Larval carcass20 ± 34 of 4 0.71None
S2 cells (growing)24 ± 14 of 4 0.84Down
Whole fly29 ± 14 of 4

Looking for FBgn0036629. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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