FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036641 through 18771 annotations produced 1 hits

survival motor neuron (Smn):

Annotation Number : CG16725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036641
Gbrowse : chr3L:16573512-16574340 (-) // 100.0 //
Probeset : 1626813_at
Accessions : protein= NP_524112;, nucleotide= NM_079388;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // C
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0036641.
BDGP gene expression has embryonic in situ data for Smn: 15 pix of staining in 11 body parts.
BioGrid reports that CG16725 interacts with CG16725 CG6539 CG8556 CG2199 CG5050 CG6570 CG31054 CG4849 .
TRiP has 2 RNAi stocks for FBgn0036641 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036641 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	169 ± 3	4 of 4	0.40	Down
Head	127 ± 5	4 of 4	0.30	Down
Eye	197 ± 6	4 of 4	0.48	Down
Thoracicoabdominal ganglion	173 ± 6	4 of 4	0.40	Down
Salivary gland	114 ± 2	4 of 4	0.28	Down
Crop	95 ± 6	4 of 4	0.20	Down
Midgut	98 ± 3	4 of 4	0.20	Down
Tubule	120 ± 7	4 of 4	0.30	Down
Hindgut	97 ± 2	4 of 4	0.20	Down
Heart	81 ± 4	4 of 4	0.20	Down
Fat body	81 ± 3	4 of 4	0.20	Down
Ovary	665 ± 7	4 of 4	1.60	Up
Testis	580 ± 19	4 of 4	1.40	Up
Male accessory glands	324 ± 9	4 of 4	0.80	Down
Virgin spermatheca	137 ± 6	4 of 4	0.34	Down
Mated spermatheca	149 ± 10	4 of 4	0.37	Down
Adult carcass	96 ± 5	4 of 4	0.20	Down
Larval CNS	575 ± 34	4 of 4	1.41	Up
Larval Salivary gland	279 ± 6	4 of 4	0.68	Down
Larval midgut	110 ± 3	4 of 4	0.27	Down
Larval tubule	165 ± 8	4 of 4	0.40	Down
Larval hindgut	140 ± 3	4 of 4	0.34	Down
Larval fat body	222 ± 15	4 of 4	0.50	Down
Larval trachea	315 ± 16	4 of 4	0.77	Down
Larval carcass	184 ± 7	4 of 4	0.45	Down
S2 cells (growing)	208 ± 4	4 of 4	0.51	Down
Whole fly	409 ± 3	4 of 4

Looking for FBgn0036641. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720