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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036648 through 18771 annotations produced 1 hits



/// (CG4098 /// CR18217):

Annotation Number : CG4098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036646 /// FBgn0036648
Gbrowse : chr3L:16601237-16602320 (-) // 100.0 // /// chr3L:16593550-16594192 (-) // 57.25 //
Probeset : 1624332_s_at
Accessions : protein= NP_660192;, nucleotide= NM_145191;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0036646 /// FBgn0036648.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 24 of 4 1.20None
Head52 ± 34 of 4 0.60Down
Eye86 ± 34 of 4 0.98None
Thoracicoabdominal ganglion123 ± 24 of 4 1.40Up
Salivary gland85 ± 74 of 4 0.97None
Crop69 ± 34 of 4 0.80Down
Midgut65 ± 34 of 4 0.70Down
Tubule75 ± 74 of 4 0.90None
Hindgut71 ± 64 of 4 0.80None
Heart53 ± 34 of 4 0.60Down
Fat body47 ± 34 of 4 0.54Down
Ovary129 ± 54 of 4 1.50Up
Testis66 ± 34 of 4 0.80Down
Male accessory glands101 ± 54 of 4 1.20None
Virgin spermatheca37 ± 54 of 4 0.43Down
Mated spermatheca56 ± 64 of 4 0.64Down
Adult carcass46 ± 54 of 4 0.50Down
Larval CNS172 ± 224 of 4 1.97Up
Larval Salivary gland138 ± 64 of 4 1.58Up
Larval midgut59 ± 44 of 4 0.67Down
Larval tubule86 ± 44 of 4 1.00None
Larval hindgut123 ± 44 of 4 1.41Up
Larval fat body93 ± 114 of 4 1.10None
Larval trachea292 ± 64 of 4 3.32Up
Larval carcass115 ± 64 of 4 1.31Up
S2 cells (growing)212 ± 54 of 4 2.42Up
Whole fly87 ± 54 of 4

Looking for FBgn0036648. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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