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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036652 through 18771 annotations produced 1 hits



(CG13032):

Annotation Number : CG13032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036652
Gbrowse : chr3L:16667063-16669366 (+) // 100.0 //
Probeset : 1630684_at
Accessions : protein= NP_648911;, nucleotide= NM_140654;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036652.
BioGrid reports that CG13032 interacts with CG13966 CG15764 CG4617 CG5009 CG5939 CG6972 CG13114 CG14734 CG15422 CG17018 CG17050 CG17666 CG31638 CG3612 CG4877 CG5280 CG6856 CG7757 .
VDRC has 2 RNAi stocks for FBgn0036652 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland6 ± 30 of 4 0.07Down
Crop3 ± 10 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut3 ± 11 of 4 0.00Down
Heart3 ± 10 of 4 0.05Down
Fat body6 ± 10 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis1118 ± 224 of 413.00Up
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.03Down
Adult carcass9 ± 30 of 4 0.10Down
Larval CNS1 ± 11 of 4 0.02Down
Larval Salivary gland7 ± 10 of 4 0.09Down
Larval midgut5 ± 00 of 4 0.06Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body140 ± 764 of 4 1.60None
Larval trachea7 ± 41 of 4 0.09Down
Larval carcass4 ± 10 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly86 ± 84 of 4

Looking for FBgn0036652. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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