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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036654 through 18771 annotations produced 1 hits


Annotation Number : CG9692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036654
Gbrowse : chr3L:16698116-16699534 (+) // 100.0 //
Probeset : 1627901_a_at
Accessions : protein= NP_788516;, nucleotide= NM_176338;
FlyMine data for FBgn0036654.
BDGP gene expression has embryonic in situ data for CG9692: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0036654 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head3 10 of 4 0.10Down
Eye3 10 of 4 0.10Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland18 30 of 4 0.65None
Crop6 20 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut4 20 of 4 0.20Down
Heart0 00 of 4 0.02Down
Fat body2 10 of 4 0.10Down
Ovary1 00 of 4 0.10Down
Testis502 184 of 417.40Up
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.06Down
Mated spermatheca2 00 of 4 0.07Down
Adult carcass2 00 of 4 0.10Down
Larval CNS2 10 of 4 0.07Down
Larval Salivary gland2 10 of 4 0.10Down
Larval midgut3 00 of 4 0.12Down
Larval tubule3 20 of 4 0.10Down
Larval hindgut2 10 of 4 0.08Down
Larval fat body71 353 of 4 2.50None
Larval trachea3 40 of 4 0.13Down
Larval carcass3 00 of 4 0.11Down
S2 cells (growing)2 00 of 4 0.09Down
Whole fly28 54 of 4

Looking for FBgn0036654. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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