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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036655 through 18771 annotations produced 1 hits



(CG13031):

Annotation Number : CG13031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036655
Gbrowse : chr3L:16717990-16718414 (+) // 100.0 //
Probeset : 1634870_at
Accessions : protein= NP_648914;, nucleotide= NM_140657;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036655.
BioGrid reports that CG13031 interacts with CG5358 CG5422 CG7056 CG9192 .
VDRC has 2 RNAi stocks for FBgn0036655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 11 of 4 0.80None
Head6 ± 02 of 4 0.70None
Eye4 ± 00 of 4 0.45Down
Thoracicoabdominal ganglion9 ± 13 of 4 1.00None
Salivary gland23 ± 50 of 4 2.57None
Crop6 ± 10 of 4 0.70None
Midgut12 ± 33 of 4 1.40None
Tubule7 ± 10 of 4 0.80None
Hindgut6 ± 02 of 4 0.70None
Heart3 ± 11 of 4 0.33Down
Fat body11 ± 13 of 4 1.22None
Ovary7 ± 04 of 4 0.80None
Testis7 ± 04 of 4 0.80None
Male accessory glands6 ± 20 of 4 0.70None
Virgin spermatheca5 ± 00 of 4 0.63None
Mated spermatheca6 ± 11 of 4 0.65None
Adult carcass14 ± 23 of 4 1.60None
Larval CNS5 ± 13 of 4 0.59None
Larval Salivary gland8 ± 10 of 4 0.87None
Larval midgut11 ± 22 of 4 1.18None
Larval tubule6 ± 02 of 4 0.70None
Larval hindgut6 ± 04 of 4 0.71None
Larval fat body14 ± 23 of 4 1.50None
Larval trachea6 ± 21 of 4 0.69None
Larval carcass9 ± 04 of 4 1.04None
S2 cells (growing)6 ± 03 of 4 0.73None
Whole fly9 ± 12 of 4

Looking for FBgn0036655. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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