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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036660 through 18771 annotations produced 1 hits



(CG13025):

Annotation Number : CG13025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036660
Gbrowse : chr3L:16769627-16772815 (-) // 100.0 //
Probeset : 1629264_at
Accessions : protein= NP_648919;, nucleotide= NM_140662;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0036660.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 2.60Up
Head9 ± 04 of 4 1.90Up
Eye10 ± 04 of 4 2.00Up
Thoracicoabdominal ganglion15 ± 14 of 4 2.90Up
Salivary gland11 ± 61 of 4 2.11None
Crop2 ± 10 of 4 0.40Down
Midgut4 ± 00 of 4 0.80None
Tubule3 ± 00 of 4 0.60Down
Hindgut5 ± 03 of 4 1.10None
Heart3 ± 11 of 4 0.70None
Fat body11 ± 34 of 4 2.16Up
Ovary8 ± 14 of 4 1.60None
Testis1 ± 00 of 4 0.30Down
Male accessory glands14 ± 21 of 4 2.70None
Virgin spermatheca4 ± 01 of 4 0.85None
Mated spermatheca3 ± 10 of 4 0.69None
Adult carcass4 ± 20 of 4 0.90None
Larval CNS56 ± 94 of 410.75Up
Larval Salivary gland0 ± 00 of 4 0.18Down
Larval midgut3 ± 10 of 4 0.70None
Larval tubule4 ± 00 of 4 0.80None
Larval hindgut4 ± 02 of 4 0.85None
Larval fat body7 ± 11 of 4 1.40None
Larval trachea3 ± 22 of 4 0.74None
Larval carcass2 ± 00 of 4 0.38Down
S2 cells (growing)7 ± 03 of 4 1.34None
Whole fly5 ± 01 of 4

Looking for FBgn0036660. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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