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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036662 through 18771 annotations produced 1 hits



(CG9706):

Annotation Number : CG9706
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036662
Gbrowse : chr3L:16776146-16778351 (+) // 100.0 //
Probeset : 1631245_s_at
Accessions : protein= NP_648921; /// NP_730198;, nucleotide= NM_140664; /// NM_168684;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008521 // acetyl-CoA transporter activity // infer
FlyMine data for FBgn0036662.
BDGP gene expression has embryonic in situ data for CG9706: 12 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0036662 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 24 of 4 0.40Down
Head101 ± 54 of 4 0.80Down
Eye96 ± 34 of 4 0.73Down
Thoracicoabdominal ganglion79 ± 54 of 4 0.60Down
Salivary gland698 ± 304 of 4 5.31Up
Crop174 ± 14 of 4 1.30Up
Midgut236 ± 94 of 4 1.80Up
Tubule180 ± 164 of 4 1.40Up
Hindgut128 ± 24 of 4 1.00None
Heart89 ± 14 of 4 0.68Down
Fat body144 ± 124 of 4 1.10None
Ovary127 ± 94 of 4 1.00None
Testis328 ± 194 of 4 2.50Up
Male accessory glands794 ± 334 of 4 6.00Up
Virgin spermatheca295 ± 104 of 4 2.24Up
Mated spermatheca324 ± 384 of 4 2.47Up
Adult carcass137 ± 44 of 4 1.00None
Larval CNS60 ± 74 of 4 0.46Down
Larval Salivary gland493 ± 554 of 4 3.75Up
Larval midgut175 ± 64 of 4 1.34Up
Larval tubule174 ± 84 of 4 1.30Up
Larval hindgut118 ± 44 of 4 0.90None
Larval fat body121 ± 164 of 4 0.90None
Larval trachea88 ± 84 of 4 0.67Down
Larval carcass111 ± 74 of 4 0.84None
S2 cells (growing)155 ± 94 of 4 1.18None
Whole fly131 ± 64 of 4

Looking for FBgn0036662. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime