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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036663 through 18771 annotations produced 1 hits



(CG9674):

Annotation Number : CG9674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036663
Gbrowse : chr3L:16780914-16800828 (-) // 100.0 //
Probeset : 1629048_s_at
Accessions : protein= NP_648922; /// NP_730201; /// NP_730202; /// NP_788517;, nucleotide= NM_140665; /// NM_168686; /// NM_168687; /// NM_176339;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004355 // glutamate synthase (NADPH) activity
FlyMine data for FBgn0036663.
Homophila reports that CG9674 is a close match (3e-17) to human gene DPD;DPYD (NP_000101), a gene associated with Thymine-uraciluria (3);{Fluorouracil toxicity, sensitivity to} (3).
BioGrid reports that CG9674 interacts with CG9951 .
VDRC has 2 RNAi stocks for FBgn0036663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1295 ± 184 of 4 6.20Up
Head878 ± 404 of 4 4.20Up
Eye1957 ± 844 of 4 9.44Up
Thoracicoabdominal ganglion1700 ± 274 of 4 8.20Up
Salivary gland962 ± 1014 of 4 4.64Up
Crop512 ± 154 of 4 2.50Up
Midgut150 ± 84 of 4 0.70None
Tubule58 ± 74 of 4 0.30Down
Hindgut498 ± 164 of 4 2.40Up
Heart416 ± 174 of 4 2.01Up
Fat body133 ± 154 of 4 0.64Down
Ovary54 ± 14 of 4 0.30Down
Testis70 ± 34 of 4 0.30Down
Male accessory glands904 ± 234 of 4 4.40Up
Virgin spermatheca130 ± 104 of 4 0.63Down
Mated spermatheca100 ± 264 of 4 0.49Down
Adult carcass239 ± 244 of 4 1.20None
Larval CNS661 ± 654 of 4 3.19Up
Larval Salivary gland177 ± 34 of 4 0.86None
Larval midgut97 ± 114 of 4 0.47Down
Larval tubule273 ± 54 of 4 1.30Up
Larval hindgut225 ± 154 of 4 1.08None
Larval fat body143 ± 184 of 4 0.70None
Larval trachea232 ± 654 of 4 1.12None
Larval carcass349 ± 484 of 4 1.68None
S2 cells (growing)248 ± 64 of 4 1.20None
Whole fly207 ± 204 of 4

Looking for FBgn0036663. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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