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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036665 through 18771 annotations produced 1 hits



(CG13024):

Annotation Number : CG13024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036665
Gbrowse : chr3L:16802750-16804000 (-) // 100.0 //
Probeset : 1633264_at
Accessions : protein= NP_648924;, nucleotide= NM_140667;
FlyMine data for FBgn0036665.
BDGP gene expression has embryonic in situ data for CG13024: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036665 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 0.40Down
Head56 ± 14 of 4 3.30Up
Eye13 ± 23 of 4 0.83None
Thoracicoabdominal ganglion8 ± 12 of 4 0.50Down
Salivary gland8 ± 31 of 4 0.51None
Crop733 ± 224 of 443.80Up
Midgut9 ± 12 of 4 0.60Down
Tubule8 ± 21 of 4 0.50Down
Hindgut204 ± 44 of 412.20Up
Heart5 ± 21 of 4 0.35Down
Fat body7 ± 21 of 4 0.46Down
Ovary5 ± 00 of 4 0.30Down
Testis11 ± 14 of 4 0.70None
Male accessory glands9 ± 31 of 4 0.60None
Virgin spermatheca7 ± 11 of 4 0.43Down
Mated spermatheca10 ± 22 of 4 0.61None
Adult carcass54 ± 64 of 4 3.20Up
Larval CNS5 ± 23 of 4 0.35Down
Larval Salivary gland8 ± 11 of 4 0.49Down
Larval midgut6 ± 10 of 4 0.39Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut22 ± 04 of 4 1.36Up
Larval fat body4 ± 11 of 4 0.30Down
Larval trachea221 ± 524 of 413.24Up
Larval carcass95 ± 74 of 4 5.71Up
S2 cells (growing)2 ± 10 of 4 0.18Down
Whole fly16 ± 14 of 4

Looking for FBgn0036665. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime