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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036670 through 18771 annotations produced 1 hits



(CG13029):

Annotation Number : CG13029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036670
Gbrowse : chr3L:16853721-16854938 (+) // 99.48 //
Probeset : 1634127_a_at
Accessions : protein= NP_648928; /// NP_730209;, nucleotide= NM_140671; /// NM_168690;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0036670.
BioGrid reports that CG13029 interacts with CG9986 .
VDRC has 3 RNAi stocks for FBgn0036670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.20Down
Head3 ± 20 of 4 0.10Down
Eye3 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.20Down
Salivary gland15 ± 40 of 4 0.47Down
Crop6 ± 22 of 4 0.20Down
Midgut4 ± 10 of 4 0.10Down
Tubule11 ± 12 of 4 0.30Down
Hindgut5 ± 00 of 4 0.20Down
Heart0 ± 00 of 4 0.03Down
Fat body20 ± 113 of 4 0.61None
Ovary6 ± 02 of 4 0.20Down
Testis366 ± 94 of 411.10Up
Male accessory glands6 ± 10 of 4 0.20Down
Virgin spermatheca16 ± 14 of 4 0.51Down
Mated spermatheca17 ± 53 of 4 0.51Down
Adult carcass12 ± 20 of 4 0.40Down
Larval CNS124 ± 254 of 4 3.77Up
Larval Salivary gland5 ± 10 of 4 0.17Down
Larval midgut5 ± 00 of 4 0.15Down
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut3 ± 01 of 4 0.09Down
Larval fat body82 ± 294 of 4 2.50None
Larval trachea4 ± 32 of 4 0.14Down
Larval carcass4 ± 10 of 4 0.13Down
S2 cells (growing)4 ± 01 of 4 0.14Down
Whole fly33 ± 24 of 4

Looking for FBgn0036670. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime